miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|76859711|gb|DV150704.1|DV150704 ATTACNNNNCAACAACTTGCCTGATGATTTCTCTAAACATGTTTTTGATGACACCTCTTCTTCTGGAAGCTATAGGAAAA
AGAAAAGCGGCGGAAAGGATGGGAAAGATGAGGAGAGTGGAAAGGTATATGAATGTAGGTTTTGTTCCCTAAAGTTCTGC
AAGTCTCAAGCTCTTGGTGGCCACATGAATCGACATAGACAAGAGAGGGAGACAGAAACTCTGAACCGAGCTCGCCAGCT
GGTCTTCAATAGTGAAAACCTAGCCGCCCCATCTCCCCACCACCATCTAGGGTGTCATCCTTCAAGTAATTATGGAGATC
CATACAGATCAGTTTATCCACCAAGAATCTTCGCCGGAACATCATCATCATCATCGTCGTCGTCAACACAACAGCCCTTT
CTATACACATCTCCGACGAGAATTCCTCAATATAATTCCTCCCAAATATGCCCTAATAATGATTATTACATAGGGCATGT
CCTTAACAATCAGACCATGAATAATAATTATGGACCAGCTGAGTCTAATTACACTTGTATTGGGGCTCCAGTGTTAGGAC
GCGGTGGTGCAGATGGGTCATTGAGCAATCAGGAACAATTAGGATTGAATTGGGGAAGGCTTTAATTTAGATCATCATGA
TCCATCCTTAGGGCTATTAATTATTATTATTTTTTTTGGAAGAGTTATGATGAATGATTTAGAATGAAGGAAGAGTGGGT
TTGACACGGCATCCAGAGAAGGGAGAAAGATAGAGAGAGAGAGACCTAACAAAACAAAAAAGAAAAAAA




Most similar to sp|Q6S591|JAG_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6S591|JAG_ARATH Zinc finger protein JAGGED OS=Arabidopsis
           thaliana GN=JAG PE=2 SV=1
          Length = 253

 Score =  118 bits (295), Expect = 5e-26
 Identities = 86/207 (41%), Positives = 103/207 (49%), Gaps = 23/207 (11%)
 Frame = +2

Query: 2   LXXNNLPDDFSKHVFDDTXXXXXXXXXXXXXXXXXXXXXXX-VYECRFCSLKFCKSQALG 178
           L  NNLPDDFSK                              VYECRFCSLKFCKSQALG
Sbjct: 8   LDLNNLPDDFSKDGNKQALEEGSSSGQRKKKGSKEGKDESGKVYECRFCSLKFCKSQALG 67

Query: 179 GHMNRHRQERETETLNRARQLVFNSENLAAP--SPHHHLGCHPSSNYGDP--YRSVY-PP 343
           GHMNRHRQERETETLN+ARQLV+ ++ +  P  SP    G H ++   DP  YRSVY  P
Sbjct: 68  GHMNRHRQERETETLNQARQLVYRNDTITPPGISP---FGYHHTT---DPTIYRSVYSSP 121

Query: 344 RIFAGTXXXXXXXXTQQPFLYTSPTRIPQYNSSQICPN---NDYYIGHVLNNQ------- 493
            I+ G+          QP +   P   P Y+S+Q  P+   NDYY+              
Sbjct: 122 MIYPGS---SSTNLVPQPPMPPPPPPYP-YSSNQYSPHNHFNDYYLNPSFRGSRSISPSP 177

Query: 494 ----TMNNNY---GPAESNYTCIGAPV 553
               T   +Y    P E  YTC+GAP+
Sbjct: 178 NLPTTTTVDYMADSPVEPGYTCVGAPI 204